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Author	SHA1	Message	Date
Emilio Soriano	2ba1cd3e5b	Add license	2023-11-22 15:10:26 -06:00
Emily Bellis	ea7fb1d6df	Merge pull request #2 from ami-sc/revert-1-esb ... Revert "SNP feature selection"	2022-11-16 17:20:54 -06:00
Emily Bellis	f967c80c16	Revert "SNP feature selection"	2022-11-16 17:20:06 -06:00
Emily Bellis	c7c3ccf85c	Merge pull request #1 from EcoEvoInfo/esb ... SNP feature selection	2022-11-16 17:19:52 -06:00
Emily Bellis	148a5df789	SNP feature selection ... These are 2,513 SNPs from Romero Navarro associated with adaptation to altitude in maize landraces from Mexico, Central America, and South America	2022-11-16 17:19:01 -06:00
ami-sc	c4e39139e7	Add Genotype Data Processing Diagram.	2022-05-26 03:28:37 -05:00
ami-sc	48ea028b3c	Ignore source files for diagrams.	2022-05-26 03:28:18 -05:00
ami-sc	5815e0f146	Update Results directory index.	2022-04-19 09:01:16 -05:00
ami-sc	f2b8c32228	Add PCA Master File.	2022-04-19 08:54:52 -05:00
ami-sc	171c8ea486	Add PCA Performance Data and Plots.	2022-04-19 08:54:37 -05:00
ami-sc	280d1cec94	Add PCA Plant Height Models.	2022-04-19 08:54:05 -05:00
ami-sc	61565d8577	Add PCA Grain Yield Models.	2022-04-19 08:53:13 -05:00
ami-sc	2ac0290b69	Add LD Master File.	2022-04-19 08:52:22 -05:00
ami-sc	e73e9b6a0f	Add LD Model Performance Data and Plots.	2022-04-19 08:52:13 -05:00
ami-sc	67a7bb9a80	Add LD Plant Height Models.	2022-04-19 08:50:24 -05:00
ami-sc	76f181e664	Add LD Grain Yield Models.	2022-04-19 08:48:50 -05:00
ami-sc	f93b6f7727	Add XGBoost Model Training script.	2022-04-19 08:46:07 -05:00
ami-sc	5de251343d	Ignore Testing Notebooks.	2022-04-19 08:45:44 -05:00
ami-sc	a35da96978	Update Models script directory index.	2022-04-19 08:45:34 -05:00
ami-sc	16ae8197b0	Add Master Dataset Generation Script.	2022-04-19 08:45:03 -05:00
ami-sc	d1546bad6d	Add Genotype Data Cleaning script.	2022-04-19 08:44:51 -05:00
ami-sc	4ae3fe70b5	Update file index.	2022-04-19 08:44:27 -05:00
ami-sc	408d8abc50	Add trailing zeroes to column names.	2022-04-19 08:43:43 -05:00
ami-sc	d7b309a69f	Update documentation and style.	2022-04-19 08:43:26 -05:00
ami-sc	583b1ccc9c	Add Results directory description.	2022-02-08 07:56:30 -06:00
ami-sc	92e46883af	Add composite Wavelet Coefficient plots.	2022-02-08 07:56:10 -06:00
ami-sc	67c513d489	Add Wavelet Transform script.	2022-02-08 07:55:23 -06:00
ami-sc	48cb933750	Add description for wavelet snippets directory.	2022-02-08 07:55:02 -06:00
ami-sc	3ea4115d80	Add description for Wavelet Transform script.	2022-02-08 07:54:46 -06:00
ami-sc	a017d4455e	Add project description.	2022-02-06 11:51:13 -06:00
ami-sc	b4bba006db	Add project logo.	2022-02-06 11:51:04 -06:00
ami-sc	9fa9e1b529	Add Notebooks directory description.	2022-02-06 10:31:21 -06:00
ami-sc	8e35d75e4b	Add Jupyter Notebooks.	2022-02-06 10:31:05 -06:00
ami-sc	cb66bde832	Add Plots directory description.	2022-02-06 10:30:36 -06:00
ami-sc	dda6f23bad	Add Offspring Latent Dimensions data plots.	2022-02-06 10:30:18 -06:00
ami-sc	4a537b7da0	Add popVAE Hierarchical Clustering data plots.	2022-02-06 10:29:36 -06:00
ami-sc	df4f1418f6	Add Offspring Principal Component Analysis data plots.	2022-02-06 10:28:59 -06:00
ami-sc	1021042df8	Add temperature plots for Offspring Data.	2022-02-06 10:27:35 -06:00
ami-sc	93f8d74a4e	Add chromosome concatenation utility script.	2022-02-06 10:25:07 -06:00
ami-sc	72ef405636	Add READMEs for Code directories.	2022-02-06 10:24:54 -06:00
ami-sc	f81a521de8	Add dimensionality reduction scripts.	2022-02-06 10:24:01 -06:00
ami-sc	97477fae8e	Add data visualization scripts.	2022-02-06 10:23:45 -06:00
ami-sc	be0ad51bbb	Add data processing scripts.	2022-02-06 10:23:27 -06:00
ami-sc	a0cb5b4764	Update script documentation.	2022-02-06 10:22:51 -06:00
ami-sc	6e42a05193	Ignore Data and References directories.	2022-02-06 10:18:42 -06:00
ami-sc	79ff49d0df	Modify directory name.	2021-12-26 21:26:27 -06:00
ami-sc	7a25a894eb	Update docstrings style.	2021-12-26 21:10:18 -06:00
ami-sc	eb001a3ef6	Add script to calculate metrics for genotype data.	2021-12-26 21:09:53 -06:00
ami-sc	89b0ea77a3	Add .csv to .h5 file converter.	2021-12-26 01:59:38 -06:00
ami-sc	a4222d6ea7	Ignore .idea directory.	2021-12-26 00:09:16 -06:00