AgAdapt/Notebooks

/Notebooks: This directory contains 4 files:

• 01__Offspring_Codes.ipynb:

  • Code for filtering of the offspring codes file provided by the G2F project.

• 02__popVAE_Latent_Dimension_Plots.ipynb:

  • Code for visualizing the Latent Dimensions generated by the popVAE Variational Autoencoder analysis on Offspring Genotype Data.

• 03__Principal_Component_Plots.ipynb:

  • Code for visualizing the principal components generated by the Principal Component Analysis on Offspring Genotype Data.

• 04__Hierarchical_Clustering:

  • Code for performing and visualizing hierarchical clustering on the Offspring Latent Dimensions.